Frontmatter

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using DataFrames, CSV, Plots, StatsPlots, PlutoUI, DataFrames
27.1 s

Chose modality here
md"""### Chose modality here"""
520 μs
@bind modality Select(["T1w", "T2w", "bold"])
281 ms

Code to load data
begin
folder = pwd() * "/mriqcdata/"
sites = ["UIUC", "WHASC", "NWU", "WASHU"]
dfs = Dict(site => CSV.read(folder*"$site/group_$modality.tsv", DataFrame) for site in sites)
md"""`Code to load data`"""
end
29.4 s

Code to add run & session info to DataFrame
begin
for (site,df) in dfs
sessions = [split(row[:bids_name],"_")[2] for row in eachrow(df)]
runs = [split(row[:bids_name],"_")[end-1] for row in eachrow(df)]
dfs[site][!,:session] .= sessions
dfs[site][!,:run] .= runs
end
md"""`Code to add run & session info to DataFrame`"""
end
1.9 s

Choose which DF to visualize
md"""#### Choose which DF to visualize"""
390 μs

Setting up drop down boxes
begin
viewdfui = @bind viewdf Select(sites);
sesfilterui = @bind sesfilter Select(
[(x -> (x.session=="ses-A" || x.session=="ses-01") ? true : false) => "ses-A",
(x -> (x.session=="ses-B" || x.session=="ses-02") ? true : false) => "ses-B",
(x -> true) => "both"],
default=(x -> true) => "both"
)
md"""`Setting up drop down boxes`"""
end
243 ms

Site: Session:

PlutoUI.combine() do Child
md"""
Site: $(Child(viewdfui)) Session: $(Child(sesfilterui))
"""
end
935 ms

MethodError: no method matching getindex(::DataFrames.Index, ::Main.var"workspace#3".var"#10#14")

Closest candidates are:

getindex(::DataFrames.AbstractIndex, !Matched::InvertedIndices.InvertedIndex) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:224

getindex(::DataFrames.AbstractIndex, !Matched::DataAPI.All) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:227

getindex(::DataFrames.AbstractIndex, !Matched::DataAPI.Between) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:226

...

  1. #filter#89@abstractdataframe.jl:1156[inlined]
  2. filter@abstractdataframe.jl:1155[inlined]
  3. top-level scope@Local: 1[inlined]
filter(sesfilter, dfs[viewdf])
---

Basic plots
md"""### Basic plots"""
212 μs

MethodError: no method matching getindex(::DataFrames.Index, ::Main.var"workspace#3".var"#10#14")

Closest candidates are:

getindex(::DataFrames.AbstractIndex, !Matched::InvertedIndices.InvertedIndex) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:224

getindex(::DataFrames.AbstractIndex, !Matched::DataAPI.All) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:227

getindex(::DataFrames.AbstractIndex, !Matched::DataAPI.Between) at ~/.julia/packages/DataFrames/Lrd7K/src/other/index.jl:226

...

  1. #filter#89@abstractdataframe.jl:1156[inlined]
  2. filter@abstractdataframe.jl:1155[inlined]
  3. top-level scope@Local: 1[inlined]
@df filter(sesfilter, dfs[viewdf]) corrplot(cols(2:5), grid=false,
fillcolor=cgrad(),size=(700,500))
---